3D^refine

•                  H O M E                
•                  T U T O R I A L                
•                  D O W N L O A D                
•                  C O N T A C T      U S                 

• Job Submission

  
  1. Provide job name and optional email id.
  

  
  

  2. Copy-paste or upload initial structure.
  

  
  

  3. Select optional post refinement analysis with MolProbity and/or RWPlus.
  

  
  

  4.Submit the job for refinement.
  






• Retrieving Results

  
  1. Web-based interactive status update.
  

  
  

  2. Statistical and visual analysis of refinement.
  

R E F E R E N C E S:

3. Bhattacharya, D., Nowotny, J., Cao, R., Cheng, J. (2016) 3Drefine: an interactive web server for efficient protein structure refinement. Nucleic Acids Research.    Web Server Issue. doi: 10.1093/nar/gkw336.

2. Bhattacharya, D., Cheng, J. (2013) i3Drefine software for protein 3D structure refinement and its assessment in CASP10. PLOS ONE. 8(7): e69648.

1. Bhattacharya, D., Cheng, J. (2012) 3Drefine: Consistent Protein Structure Refinement by Optimizing Hydrogen Bonding Network and Atomic Level Energy Minimization. Proteins: Structure, Function, and Bioinformatics. 81(1): 119-131.