Standalone Version
Software 
User manual
CASP11 dataset (blind assessment)
Initial
Refined
Experimental
CASP10 dataset (blind assessment)
Initial
Refined
Experimental
CASP9 dataset (benchmark assessment)
Initial
Refined
Experimental
CASP8 dataset (benchmark assessment)
Initial
Refined
Experimental
R E F E R E N C E S:
3. Bhattacharya, D., Nowotny, J., Cao, R., Cheng, J. (2016) 3Drefine: an interactive web server for efficient protein structure refinement. Nucleic Acids Research. Web Server Issue. doi: 10.1093/nar/gkw336.
2. Bhattacharya, D., Cheng, J. (2013) i3Drefine software for protein 3D structure refinement and its assessment in CASP10. PLOS ONE. 8(7): e69648.
1. Bhattacharya, D., Cheng, J. (2012) 3Drefine: Consistent Protein Structure Refinement by Optimizing Hydrogen Bonding Network and Atomic Level Energy Minimization. Proteins: Structure, Function, and Bioinformatics. 81(1): 119-131.